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annotate beagle_phase.xml @ 48:cea4a54c52d0 draft

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author nicolas
date Wed, 26 Oct 2016 17:31:45 -0400
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1 <tool id="Beagle_phase" name="Beagle_phase" >
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2 <description> beagle as a phasing tools</description>
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3 <command interpreter="bash">beagle_phase.sh $vcf_input </command>
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4 <inputs>
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5 <param format="vcf" name="vcf_input" type="data" label="VCF file to phase"/>
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6 </inputs>
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7 <outputs>
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8 <data format="vcf" name="vcf_ouput" label="Phased VCF" from_work_dir="out_phased.vcf.gz"/>
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9 <data format="txt" name="log" label="Beagle log file" from_work_dir="out.log"/>
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10 </outputs>
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12 </tool>