# HG changeset patch # User nicolas # Date 1477519542 14400 # Node ID 100b17358190bf6173b28e1342e7b5a70b6efd09 # Parent ed9ad79143a702264f04757234d320754ccf99a7 Uploaded diff -r ed9ad79143a7 -r 100b17358190 aggregation.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/aggregation.xml Wed Oct 26 18:05:42 2016 -0400 @@ -0,0 +1,78 @@ + + predict phenotype by combining multiple classifiers + + aggregation.R $config > ${output1} + + + + + + + + + + + + + + + + + + + + + + + + + + +## Desc: this file is sourced in encode wrapper script +## as means to pass all galaxy params to R +"${lassoPred}" -> lassoPred +"${rfPred}" -> rfPred +"${rrBLUPPred}" -> rrBLUPPred +"${svmPred}" -> svmPred +"${phenotype}" -> phenotype +"${model}" -> model +"${out}" -> out +"${eval}" -> evaluation +"${folds}" -> folds +"${method}" -> method +"${kernel}" -> kernel +"${eval}" -> doEvaluation + + + + + + + + + + + + \ No newline at end of file