# HG changeset patch # User nicolas # Date 1477658732 14400 # Node ID dea79015dfc9234164d547084c48c138777f6393 # Parent ca6af7b1207346efd8f11f2f3a72d0ccb1593fc4 Uploaded diff -r ca6af7b12073 -r dea79015dfc9 encode.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/encode.xml Fri Oct 28 08:45:32 2016 -0400 @@ -0,0 +1,40 @@ + + encode genotypes for further machine learning analysis + + encode.R $config > ${output1} + + + + + + + + + + + + + +## Desc: this file is sourced in encode wrapper script +## as means to pass all galaxy params to R +"${genotype}" -> genotype +"${separator}" -> sep +"${output1}" -> out + + + + + + + + + + Takes the genotype and encode them in the desired schem (usually 3 integer like 1/2/3) for minor homozygous/heterozygous/major homozygous. The output is a .csv file that may be use by other tools in the OGHMA workflow. + + \ No newline at end of file