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view annovar_yaml/annovar_yaml.xml @ 16:fe3deb1dc20b draft

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Uploaded new version of annovar yaml script
author niels
date Fri, 07 Jun 2019 10:39:48 -0400
parents 7f4fb56714e8
children ce16079341bf
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<tool id="annovar_yaml" name="Annovar YAML" version="1.0">
    <requirements>
        <requirement type="package" version="1.29">perl-yaml</requirement>
        <requirement type="package" version="1.73">perl-yaml-tiny</requirement>
        <requirement type="package" version="0.74">perl-yaml-xs</requirement>
        <requirement type="package" version="2.173">perl-data-dumper</requirement>
        <requirement type="package" version="2.50">perl-getopt-long</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        perl $__tool_directory__/annovar_yaml.pl --invcf $vcf --inyml $yaml --outvcf $output
    ]]></command>

    <inputs>

        <param type="data" name="yaml" format="txt" />
        <param type="data" name="vcf" format="vcf" />

    </inputs>
    <outputs>
        <data name="output" format="vcf"/>
    </outputs>
    <help><![CDATA[
        TODO: Fill in help for Annovar YAML tool. 
    ]]></help>
</tool>