Mercurial > repos > niels > annovar_yaml_wrapper

changeset 3:74621486d2d8 draft

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Uploaded
author niels
date Mon, 08 Apr 2019 10:08:13 -0400
parents b76a4ce5e5e1
children 0925376a2624
files annovar_yaml.pl annovar_yaml.xml
diffstat 2 files changed, 22 insertions(+), 0 deletions(-) [+]
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line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/annovar_yaml.pl	Mon Apr 08 10:08:13 2019 -0400
@@ -0,0 +1,1 @@
+ 
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/annovar_yaml.xml	Mon Apr 08 10:08:13 2019 -0400
@@ -0,0 +1,21 @@
+<tool id="annovar_yaml" name="Annovar YAML" version="0.1.0">
+    <requirements>
+        <requirement type="package" version="1.2.7">perl-yaml</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        perl $__tool_directory__/script.pl --input $vcf --yaml $yaml --output $output
+    ]]></command>
+
+    <inputs>
+        
+        <param type="data" name="yaml" format="txt" />
+        <param type="data" name="vcf" format="vcf" />
+
+    </inputs>
+    <outputs>
+        <data name="output" format="vcf"/>
+    </outputs>
+    <help><![CDATA[
+        TODO: Fill in help.
+    ]]></help>
+</tool>
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