diff Makefile @ 4:c70137414dcd draft

sickle v1.33

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Makefile	Wed Jul 23 18:35:10 2014 -0400
@@ -0,0 +1,45 @@
+PROGRAM_NAME = sickle
+VERSION = 1.33
+CC = gcc
+CFLAGS = -Wall -pedantic -DVERSION=$(VERSION)
+DEBUG = -g
+OPT = -O3
+ARCHIVE = $(PROGRAM_NAME)_$(VERSION)
+LDFLAGS=
+LIBS = -lz
+SDIR = src
+
+.PHONY: clean default build distclean dist debug
+
+default: build
+
+sliding.o: $(SDIR)/sliding.c $(SDIR)/kseq.h $(SDIR)/sickle.h
+	$(CC) $(CFLAGS) $(OPT) -c $(SDIR)/$*.c
+
+trim_single.o: $(SDIR)/trim_single.c $(SDIR)/sickle.h $(SDIR)/kseq.h
+	$(CC) $(CFLAGS) $(OPT) -c $(SDIR)/$*.c
+
+trim_paired.o: $(SDIR)/trim_paired.c $(SDIR)/sickle.h $(SDIR)/kseq.h
+	$(CC) $(CFLAGS) $(OPT) -c $(SDIR)/$*.c
+
+sickle.o: $(SDIR)/sickle.c $(SDIR)/sickle.h
+	$(CC) $(CFLAGS) $(OPT) -c $(SDIR)/$*.c
+
+print_record.o: $(SDIR)/print_record.c $(SDIR)/print_record.h
+	$(CC) $(CFLAGS) $(OPT) -c $(SDIR)/$*.c
+
+clean:
+	rm -rf *.o $(SDIR)/*.gch ./sickle
+
+distclean: clean
+	rm -rf *.tar.gz
+
+dist:
+	tar -zcf $(ARCHIVE).tar.gz src Makefile README.md sickle.xml LICENSE
+
+build: sliding.o trim_single.o trim_paired.o sickle.o print_record.o
+	$(CC) $(CFLAGS) $(LDFLAGS) $(OPT) $? -o sickle $(LIBS)
+
+debug:
+	$(MAKE) build "CFLAGS=-Wall -pedantic -g -DDEBUG"
+