Mercurial > repos > nikhil-joshi > sickle

changeset 3:f6ebdaca9925 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author nikhil-joshi
date Thu, 05 Sep 2013 19:20:33 -0400
parents e52679b44700
children c70137414dcd
files sickle/sickle.xml
diffstat 1 files changed, 3 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/sickle/sickle.xml	Tue Aug 06 23:10:54 2013 -0400
+++ b/sickle/sickle.xml	Thu Sep 05 19:20:33 2013 -0400
@@ -24,11 +24,11 @@
 
                 #if $input_paired1.ext == "fastq":
                 -t sanger
-                #else if $input_single.ext == "fastqsanger":
+                #else if $input_paired1.ext == "fastqsanger":
                 -t sanger
-                #else if $input_single.ext == "fastqillumina":
+                #else if $input_paired1.ext == "fastqillumina":
                 -t illumina
-                #else if $input_single.ext == "fastqsolexa":
+                #else if $input_paired1.ext == "fastqsolexa":
                 -t solexa
                 #end if
 
@@ -110,10 +110,6 @@
 Note that Sickle will remove the 2nd fastq record header (on the "+" line) and replace it with simply a "+". This is the default format for CASAVA >= 1.8.
 
 Sickle also supports gzipped file inputs.
-
-Copyright: Nikhil Joshi
-http://bioinformatics.ucdavis.edu
-http://github.com/ucdavis-bioinformatics
 	</help>
 
 </tool>