Mercurial > repos > nikhil-joshi > sickle
changeset 3:f6ebdaca9925 draft
Uploaded
author | nikhil-joshi |
---|---|
date | Thu, 05 Sep 2013 19:20:33 -0400 |
parents | e52679b44700 |
children | c70137414dcd |
files | sickle/sickle.xml |
diffstat | 1 files changed, 3 insertions(+), 7 deletions(-) [+] |
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--- a/sickle/sickle.xml Tue Aug 06 23:10:54 2013 -0400 +++ b/sickle/sickle.xml Thu Sep 05 19:20:33 2013 -0400 @@ -24,11 +24,11 @@ #if $input_paired1.ext == "fastq": -t sanger - #else if $input_single.ext == "fastqsanger": + #else if $input_paired1.ext == "fastqsanger": -t sanger - #else if $input_single.ext == "fastqillumina": + #else if $input_paired1.ext == "fastqillumina": -t illumina - #else if $input_single.ext == "fastqsolexa": + #else if $input_paired1.ext == "fastqsolexa": -t solexa #end if @@ -110,10 +110,6 @@ Note that Sickle will remove the 2nd fastq record header (on the "+" line) and replace it with simply a "+". This is the default format for CASAVA >= 1.8. Sickle also supports gzipped file inputs. - -Copyright: Nikhil Joshi -http://bioinformatics.ucdavis.edu -http://github.com/ucdavis-bioinformatics </help> </tool>