Mercurial > repos > nilesh > bcftools

diff bcftools_view.xml @ 2:14567aa2be12 draft default tip

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Added wrapper script for correct stderr handling
author geert-vandeweyer
date Thu, 10 Apr 2014 09:44:09 -0400
parents 3182c7fac413
children
line wrap: on
line diff
--- a/bcftools_view.xml	Thu Jul 11 14:27:32 2013 -0500
+++ b/bcftools_view.xml	Thu Apr 10 09:44:09 2014 -0400
@@ -3,8 +3,8 @@
     <requirements>
         <requirement type="package" version="0.1.18">samtools</requirement>
     </requirements>
-    <command interpreter="python">
-        bcftools view 
+    <command interpreter='python'>
+        bcftools_wrapper.py bcftools view 
             #if str( $A ) == "true": 
                 -A
             #end if
@@ -51,7 +51,7 @@
                 -v
 	    #end if	
 	$input
-        > $output
+        > $output 
     </command>
     <inputs>
         <param name="input" type="data" format="bcf" label="Choose a bcf file to view" />