annotate tool_dependencies.xml @ 13:884eccbe5659 draft

Uploaded
author nilesh
date Wed, 26 Jun 2013 20:24:54 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
13
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
1 <?xml version="1.0"?>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
2 <tool_dependency>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
3 <set_environment version="1.0">
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
4 <environment_variable action="set_to" name="FQVAL_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
5 </set_environment>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
6 <package name="fastq_validator" version="1.0.0">
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
7 <install version="1.0">
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
8 <actions>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
9 <action type="download_file">http://genome.sph.umich.edu/w/images/2/20/FastQValidatorLibStatGen.0.1.1a.tgz</action>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
10 <action type="shell_command">tar xvf FastQValidatorLibStatGen.0.1.1a.tgz</action>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
11 <action type="shell_command">cd fastQValidator_0.1.1a</action>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
12 <action type="shell_command">make</action>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
13 <action type="move_directory_files">
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
14 <source_directory>fastQValidator</source_directory>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
15 <destination_directory>$INSTALL_DIR</destination_directory>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
16 </action>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
17 <action type="set_environment">
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
18 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
19 </action>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
20 </actions>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
21 </install>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
22 <readme>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
23 View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
24 </readme>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
25 <repository changeset_revision="ea2a9017e150" name="fastq_validator" owner="nilesh" toolshed="http://toolshed.g2.bx.psu.edu" />
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
26 </package>
884eccbe5659 Uploaded
nilesh
parents:
diff changeset
27 </tool_dependency>