annotate tool_dependencies.xml @ 5:9d25b703a285 draft

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<?xml version="1.0"?>
<tool_dependency>
    <set_environment version="1.0">
        <environment_variable action="set_to" name="FQVAL_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>   
    </set_environment>
    <package name="fastq_validator" version="1.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://github.com/statgen/fastQValidator/archive/master.zip</action>
                <action type="shell_command">make all</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
           View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
        </readme>
        <repository changeset_revision="01fc6aa1d81c" name="fastq_validator" owner="nilesh" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
</tool_dependency>