annotate tool_dependencies.xml @ 32:9fe9e0e77afd draft

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author nilesh
date Thu, 27 Jun 2013 11:13:27 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="libStatGen" version="1.0.0">
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4 <install version="1.0">
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5 <actions>
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6 <action type="shell_command">git clone https://github.com/statgen/libStatGen.git</action>
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7 <action type="shell command">git reset --hard c73a8cde531c624bfd335d2f5cc5067444e0b3dd</action>
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8 <action type="shell command">sudo apt-get install g++ libssl-dev zlib1g-dev</action>
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9 <action type="shell command">make</action>
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10 <action type="set_environment">
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11 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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12 </action>
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13 </actions>
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14 </install>
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15 <readme>
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16 View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
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17 </readme>
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18 <repository changeset_revision="556ca790e027" name="fastq_validator" owner="nilesh" toolshed="http://toolshed.g2.bx.psu.edu" />
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19 </package>
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20 <!-- <package name="fastq_validator" version="1.0.0">
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21 <install version="1.0">
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22 <actions>
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23 <action type="download_file">http://genome.sph.umich.edu/w/images/2/20/FastQValidatorLibStatGen.0.1.1a.tgz</action>
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24 <action type="shell_command">tar xvf FastQValidatorLibStatGen.0.1.1a.tgz</action>
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25 <action type="shell command">make all</action>
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26 <action type="set_environment">
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27 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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28 </action>
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29 </actions>
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30 </install>
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31 <readme>
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32 View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
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33 </readme>
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34 <repository name="fastq_validator" owner="nilesh" toolshed="http://toolshed.g2.bx.psu.edu" />
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35 </package> -->
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36 </tool_dependency>