annotate tool_dependencies.xml @ 32:9fe9e0e77afd draft

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<?xml version="1.0"?>
<tool_dependency>
    <package name="libStatGen" version="1.0.0">
        <install version="1.0">
            <actions>
                <action type="shell_command">git clone https://github.com/statgen/libStatGen.git</action>
                <action type="shell command">git reset --hard c73a8cde531c624bfd335d2f5cc5067444e0b3dd</action>
                <action type="shell command">sudo apt-get install g++ libssl-dev zlib1g-dev</action>
                <action type="shell command">make</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
           View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
        </readme>
        <repository changeset_revision="556ca790e027" name="fastq_validator" owner="nilesh" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
    <!-- <package name="fastq_validator" version="1.0.0">
        <install version="1.0">
            <actions>
                <action type="download_file">http://genome.sph.umich.edu/w/images/2/20/FastQValidatorLibStatGen.0.1.1a.tgz</action>
                <action type="shell_command">tar xvf FastQValidatorLibStatGen.0.1.1a.tgz</action>
                <action type="shell command">make all</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
           View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
        </readme>
        <repository name="fastq_validator" owner="nilesh" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package> -->
</tool_dependency>