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38
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="libStatGen" version="1.0.0">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_file">http://genome.sph.umich.edu/w/images/2/20/FastQValidatorLibStatGen.0.1.1a.tgz</action>
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7 <action type="shell_command">tar xvf FastQValidatorLibStatGen.0.1.1a.tgz</action>
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8 <action type="move_directory_files">
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9 <source_directory>fastQValidator_0.1.1a/bin</source_directory>
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10 <destination_directory>$INSTALL_DIR</destination_directory>
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11 </action>
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12 <action type="shell_command">make all</action>
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13 <action type="set_environment">
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14 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/fastQValidator/</environment_variable>
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15 </action>
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16 </actions>
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17 </install>
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18 <readme>
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19 View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
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20 </readme>
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21 <repository changeset_revision="d8ce37d31baa" name="fastq_validator" owner="nilesh" toolshed="http://toolshed.g2.bx.psu.edu" />
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22 </package>
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23 <!-- <package name="fastq_validator" version="1.0.0">
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24 <install version="1.0">
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25 <actions>
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26 <action type="download_file">http://genome.sph.umich.edu/w/images/2/20/FastQValidatorLibStatGen.0.1.1a.tgz</action>
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27 <action type="shell_command">tar xvf FastQValidatorLibStatGen.0.1.1a.tgz</action>
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28 <action type="shell command">make all</action>
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29 <action type="set_environment">
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30 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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31 </action>
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32 </actions>
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33 </install>
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34 <readme>
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35 View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
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36 </readme>
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37 <repository name="fastq_validator" owner="nilesh" toolshed="http://toolshed.g2.bx.psu.edu" />
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38 </package> -->
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39 </tool_dependency>
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