comparison tool_dependencies.xml @ 17:a8016878caed draft

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author nilesh
date Wed, 26 Jun 2013 20:32:05 -0400
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16:cd4431e308fa 17:a8016878caed
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <set_environment version="1.0">
4 <environment_variable action="set_to" name="FQVAL_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
5 </set_environment>
6 <package name="fastq_validator" version="1.0.0">
7 <install version="1.0">
8 <actions>
9 <action type="download_file">http://genome.sph.umich.edu/w/images/2/20/FastQValidatorLibStatGen.0.1.1a.tgz</action>
10 <action type="shell_command">tar xvf FastQValidatorLibStatGen.0.1.1a.tgz</action>
11 <action type="shell_command">cd fastQValidator_0.1.1a/</action>
12 <action type="shell_command">make all</action>
13 <action type="move_directory_files">
14 <source_directory>fastQValidator</source_directory>
15 <destination_directory>$INSTALL_DIR</destination_directory>
16 </action>
17 <action type="set_environment">
18 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
19 </action>
20 </actions>
21 </install>
22 <readme>
23 View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
24 </readme>
25 <repository changeset_revision="cd4431e308fa" name="fastq_validator" owner="nilesh" toolshed="http://toolshed.g2.bx.psu.edu" />
26 </package>
27 </tool_dependency>