Mercurial > repos > nilesh > fastq_validator

diff tool_dependencies.xml @ 38:c965928f7c1a draft

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author nilesh
date Thu, 27 Jun 2013 11:41:59 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Jun 27 11:41:59 2013 -0400
@@ -0,0 +1,39 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="libStatGen" version="1.0.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_file">http://genome.sph.umich.edu/w/images/2/20/FastQValidatorLibStatGen.0.1.1a.tgz</action>
+                <action type="shell_command">tar xvf FastQValidatorLibStatGen.0.1.1a.tgz</action>
+                <action type="move_directory_files">
+                    <source_directory>fastQValidator_0.1.1a/bin</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
+                <action type="shell_command">make all</action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/fastQValidator/</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+           View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
+        </readme>
+        <repository changeset_revision="d8ce37d31baa" name="fastq_validator" owner="nilesh" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+    <!-- <package name="fastq_validator" version="1.0.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_file">http://genome.sph.umich.edu/w/images/2/20/FastQValidatorLibStatGen.0.1.1a.tgz</action>
+                <action type="shell_command">tar xvf FastQValidatorLibStatGen.0.1.1a.tgz</action>
+                <action type="shell command">make all</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+           View the FastQ Validator overview at http://genome.sph.umich.edu/wiki/FastQValidator.
+        </readme>
+        <repository name="fastq_validator" owner="nilesh" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package> -->
+</tool_dependency>