annotate test-data/hg19.HouseKeepingGenes_30.bed @ 50:f242ee103277 draft

planemo upload for repository https://github.com/lparsons/galaxy_tools/tree/master/tools/rseqc commit 91ad241aa3f34b70649d13a5f18611da7577a5ee

chr1	100652477	100715409	NM_001918	0	-	100661810	100715376	0	11	9501,72,192,78,167,217,122,182,76,124,84,	0,19308,19523,23772,27895,29061,31704,43811,48514,53839,62848,
chr1	175913961	176176380	NM_022457	0	-	175914288	176176114	0	20	345,45,161,125,118,117,82,109,144,136,115,58,77,60,69,120,77,98,60,673,	0,2369,42117,43462,44536,82746,98360,98884,101355,136326,140950,171798,190184,191662,204180,218043,218989,231084,239807,261746,
chr1	150980972	151008189	NM_021222	0	+	150981108	151006710	0	8	175,93,203,185,159,95,159,1908,	0,9315,9970,16114,17018,18736,20289,25309,
chr1	6281252	6296044	NM_012405	0	-	6285139	6295971	0	5	4070,218,170,89,268,	0,10709,12281,13693,14524,
chr1	20959947	20978004	NM_032409	0	+	20960041	20977184	0	8	481,288,101,183,164,128,237,1078,	0,4387,6437,11035,12105,15050,15540,16979,
chr1	32479294	32509482	NM_006559	0	+	32479596	32508225	0	9	684,125,117,147,134,202,68,59,1355,	0,16604,17830,19494,23216,24141,24858,25821,28833,
chr1	27248212	27273362	NM_006600	0	+	27248339	27272672	0	9	208,78,204,66,117,195,84,119,742,	0,2367,19735,20031,20938,21149,23668,23846,24408,
chr1	31404352	31538564	NM_014676	0	-	31406057	31532413	0	22	1837,193,122,126,138,129,130,268,237,297,144,139,152,102,94,271,167,179,109,69,374,102,	0,5137,9645,10492,13840,18627,20728,22208,33168,34476,35661,36848,43145,48556,49806,60884,63548,74347,75488,97290,127698,134110,
chr1	36690016	36770957	NM_005119	0	+	36748164	36769618	0	12	90,103,168,903,705,173,112,85,188,199,144,1561,	0,34966,58117,61952,64644,66958,68182,69435,72167,76470,77137,79380,
chr1	46092975	46152302	NM_021639	0	-	46093927	46124759	0	13	1105,103,125,159,141,194,73,287,130,115,1042,45,219,	0,2272,3178,6185,6792,12906,15123,27239,27886,31724,32880,58272,59108,
chr1	44870959	45117396	NM_018150	0	+	44877769	45116447	0	15	243,742,133,46,102,43,44,133,97,87,56,79,109,75,1021,	0,6693,208877,217454,221009,227055,230257,230742,239410,239707,239933,240122,244373,244595,245416,
chr1	54519273	54565416	NM_153035	0	+	54520095	54562146	0	5	158,144,142,194,3459,	0,780,15155,34996,42684,
chr1	50906934	51425936	NM_007051	0	-	50907111	51425483	0	19	261,216,78,81,89,137,155,82,64,127,96,87,106,92,92,206,47,69,498,	0,34201,49325,50458,94106,98329,125814,141355,142389,143422,154858,214179,264523,297600,303421,346737,360368,416666,518504,
chr1	77554666	77685132	NM_005482	0	-	77558058	77685087	0	11	3509,85,173,111,118,97,112,136,92,54,138,	0,33293,65467,72313,72612,74864,77737,80278,117658,121454,130328,
chr1	94352589	94375012	NM_002061	0	-	94354545	94374719	0	7	2126,115,203,60,85,66,419,	0,7580,9584,10805,14551,17489,22004,
chr1	112162404	112259317	NM_002884	0	+	112233982	112251857	0	8	152,84,69,57,141,144,116,4265,	0,71551,75558,77658,83553,84560,89366,92648,
chr1	118472371	118503049	NM_006784	0	+	118475942	118502070	0	27	34,203,210,119,79,96,114,102,98,108,231,94,102,86,136,57,101,112,135,51,66,93,48,44,129,94,1135,	0,3539,4724,7020,8731,9728,11078,11375,12001,12688,13647,16337,18656,20002,20246,21085,22227,22548,22779,23197,23727,24258,24831,25566,27319,29161,29543,
chr1	156219014	156252620	NM_015327	0	-	156220377	156252471	0	22	1447,139,75,91,160,60,159,176,76,176,600,138,209,69,126,79,90,90,157,124,99,223,	0,1634,2179,3190,3695,4225,9781,11227,12109,14171,16557,17317,18246,18891,19066,23096,24137,25373,27861,28701,29712,33383,
chr1	180257351	180472022	NM_032360	0	-	180257497	180471401	0	8	301,31,90,106,83,97,65,843,	0,26475,109299,125149,141963,204052,207244,213828,
chr1	183441505	183523328	NM_173156	0	+	183441755	183521066	0	22	279,32,118,133,172,72,151,136,163,157,71,61,120,427,145,383,372,81,160,171,146,2376,	0,40466,43503,45317,54225,55585,56521,57027,60793,61305,64774,66009,68613,69705,71982,72559,73595,76837,77393,78380,78674,79447,
chr1	220141941	220220000	NM_004446	0	-	220142147	220219730	0	32	357,65,79,161,174,198,156,102,80,73,210,52,263,234,360,118,113,208,137,111,60,85,234,172,193,127,95,140,157,100,85,316,	0,458,3469,4638,9946,10818,11485,12156,12778,14172,14589,15606,18542,19990,28383,32538,36648,37506,38602,42346,49849,50395,51388,53747,55664,56532,61786,63787,64902,66314,71585,77743,
chr1	229577043	229644088	NM_018230	0	-	229577650	229643996	0	26	744,89,65,81,119,136,159,134,252,100,123,225,95,164,92,158,148,148,71,156,171,135,108,104,119,274,	0,3617,7829,9228,11228,16864,19314,22246,23327,24123,25337,29283,34341,36300,42757,45074,46169,48658,54198,54595,56839,58387,59459,60702,64743,66771,
chr1	1309109	1310818	NM_017900	0	-	1309180	1310136	0	4	173,446,86,285,	0,270,975,1424,
chr1	9908333	9970316	NM_020248	0	-	9910775	9932122	0	6	2501,91,120,85,34,164,	0,22911,23693,29629,35429,61819,
chr1	10093040	10241296	NM_006048	0	+	10093728	10240014	0	27	712,187,136,88,145,229,142,101,115,84,57,117,99,114,199,139,100,128,99,236,127,145,135,192,175,147,1344,	0,39045,62478,68125,69965,72533,84476,86530,88979,93811,96409,97517,97732,99386,102005,104084,111957,113980,116201,118343,125373,128159,135153,138155,145661,146433,146912,
chr1	11126675	11159938	NM_002685	0	-	11126774	11159888	0	24	130,77,62,172,74,85,96,107,79,51,112,51,149,157,191,144,111,76,115,166,105,124,137,161,	0,1389,2026,2940,4281,5468,7612,10223,10746,10982,13092,13880,14145,14463,16069,20829,21181,21504,23935,24395,24874,29139,31401,33102,
chr1	10535002	10690815	NM_004565	0	+	10535023	10690044	0	9	57,48,85,129,86,103,98,92,1228,	0,20328,61267,124292,143386,148073,149394,152326,154585,
chr1	16576558	16678948	NM_018994	0	-	16577164	16641913	0	10	1722,117,57,97,111,154,135,117,267,199,	0,2224,3032,3571,5647,6542,44719,55739,65105,102191,
chr1	16174358	16266950	NM_015001	0	+	16174562	16265922	0	15	287,321,477,161,201,152,126,114,114,101,8176,483,195,159,1160,	0,24952,28338,61457,63237,68264,71062,71540,73006,74385,80227,89299,89948,90854,91432,
chr1	17866329	18024370	NM_018125	0	+	17907090	18023875	0	29	116,80,186,34,92,84,176,117,109,107,78,180,117,93,174,146,15,182,116,128,101,122,87,224,155,149,175,123,1028,	0,40718,47625,48611,62292,63673,67967,73223,76259,79504,82029,83161,84552,86121,87495,92486,94713,95000,98053,98727,100367,108719,114801,116044,116719,124612,147738,155323,157013,