Mercurial > repos > nilesh > rseqc

comparison test-data/output.junctionSaturation_plot.r @ 51:09846d5169fa draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 37fb1988971807c6a072e1afd98eeea02329ee83
author iuc
date Tue, 14 Mar 2017 10:23:21 -0400
parents 6b33e31bda10
children
comparison
equal deleted inserted replaced
50:f242ee103277 51:09846d5169fa
1 pdf('output.junctionSaturation_plot.pdf') 1 pdf('output.junctionSaturation_plot.pdf')
2 x=c(5,10,15,20,25,30,35,40,45,50,55,60,65,70,75,80,85,90,95,100) 2 x=c(5,10,15,20,25,30,35,40,45,50,55,60,65,70,75,80,85,90,95,100)
3 y=c(0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1,1,1,1) 3 y=c(0,0,0,0,0,0,1,1,1,1,1,1,1,1,1,1,1,1,1,1)
4 z=c(0,0,0,0,0,0,1,1,1,1,1,1,1,2,2,2,2,2,2,3) 4 z=c(0,0,0,0,0,0,1,1,1,1,1,1,1,2,2,2,2,2,2,3)
5 w=c(0,0,0,0,0,0,1,1,1,1,1,1,1,1,1,1,1,1,1,2) 5 w=c(0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,1,1,1,2)
6 m=max(0,0,0) 6 m=max(0,0,0)
7 n=min(0,0,0) 7 n=min(0,0,0)
8 plot(x,z/1000,xlab='percent of total reads',ylab='Number of splicing junctions (x1000)',type='o',col='blue',ylim=c(n,m)) 8 plot(x,z/1000,xlab='percent of total reads',ylab='Number of splicing junctions (x1000)',type='o',col='blue',ylim=c(n,m))
9 points(x,y/1000,type='o',col='red') 9 points(x,y/1000,type='o',col='red')
10 points(x,w/1000,type='o',col='green') 10 points(x,w/1000,type='o',col='green')