comparison inner_distance.xml @ 60:1421603cc95b draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 1dfe55ca83685cadb0ce8f6ebbd8c13232376d1d

59:dbedfc5f5a3c

<tool id="rseqc_inner_distance" name="Inner Distance" version="@TOOL_VERSION@.1">
    <description>calculate the inner distance (or insert size) between two paired RNA reads</description>
    <expand macro="bio_tools"/>
    <macros>
        <import>rseqc_macros.xml</import>
    </macros>

    <expand macro="stdio" />

    <version_command><![CDATA[inner_distance.py --version]]></version_command>

    <command><![CDATA[
        inner_distance.py -i '${input}' -o output -r '${refgene}'
            --sample-size ${sample_size}
            --lower-bound ${lowerBound}
            --upper-bound ${upperBound}
            --step ${step}
            --mapq ${mapq}

60:1421603cc95b

<tool id="rseqc_inner_distance" name="Inner Distance" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@">
    <description>calculate the inner distance (or insert size) between two paired RNA reads</description>
    <expand macro="bio_tools"/>
    <macros>
        <import>rseqc_macros.xml</import>
    </macros>

    <expand macro="stdio" />

    <version_command><![CDATA[inner_distance.py --version]]></version_command>

    <command><![CDATA[
        @BAM_SAM_INPUTS@
        inner_distance.py -i 'input.${extension}' -o output -r '${refgene}'
            --sample-size ${sample_size}
            --lower-bound ${lowerBound}
            --upper-bound ${upperBound}
            --step ${step}
            --mapq ${mapq}