Mercurial > repos > nilesh > rseqc
comparison inner_distance.xml @ 60:1421603cc95b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 1dfe55ca83685cadb0ce8f6ebbd8c13232376d1d
author | iuc |
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date | Sat, 26 Nov 2022 15:19:14 +0000 |
parents | dbedfc5f5a3c |
children | 5968573462fa |
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59:dbedfc5f5a3c | 60:1421603cc95b |
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1 <tool id="rseqc_inner_distance" name="Inner Distance" version="@TOOL_VERSION@.1"> | 1 <tool id="rseqc_inner_distance" name="Inner Distance" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@"> |
2 <description>calculate the inner distance (or insert size) between two paired RNA reads</description> | 2 <description>calculate the inner distance (or insert size) between two paired RNA reads</description> |
3 <expand macro="bio_tools"/> | 3 <expand macro="bio_tools"/> |
4 <macros> | 4 <macros> |
5 <import>rseqc_macros.xml</import> | 5 <import>rseqc_macros.xml</import> |
6 </macros> | 6 </macros> |
10 <expand macro="stdio" /> | 10 <expand macro="stdio" /> |
11 | 11 |
12 <version_command><![CDATA[inner_distance.py --version]]></version_command> | 12 <version_command><![CDATA[inner_distance.py --version]]></version_command> |
13 | 13 |
14 <command><![CDATA[ | 14 <command><![CDATA[ |
15 inner_distance.py -i '${input}' -o output -r '${refgene}' | 15 @BAM_SAM_INPUTS@ |
16 inner_distance.py -i 'input.${extension}' -o output -r '${refgene}' | |
16 --sample-size ${sample_size} | 17 --sample-size ${sample_size} |
17 --lower-bound ${lowerBound} | 18 --lower-bound ${lowerBound} |
18 --upper-bound ${upperBound} | 19 --upper-bound ${upperBound} |
19 --step ${step} | 20 --step ${step} |
20 --mapq ${mapq} | 21 --mapq ${mapq} |