comparison read_NVC.xml @ 60:1421603cc95b draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 1dfe55ca83685cadb0ce8f6ebbd8c13232376d1d

59:dbedfc5f5a3c

<tool id="rseqc_read_NVC" name="Read NVC" version="@TOOL_VERSION@">
    <description>to check the nucleotide composition bias</description>
    <expand macro="bio_tools"/>
    <macros>
        <import>rseqc_macros.xml</import>
    </macros>

    <expand macro="stdio" />

    <version_command><![CDATA[read_NVC.py --version]]></version_command>

    <command><![CDATA[
        read_NVC.py
            --input-file '${input}'
            --out-prefix output
            ${nx}
            --mapq ${mapq}
    ]]>
    </command>

60:1421603cc95b

<tool id="rseqc_read_NVC" name="Read NVC" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@">
    <description>to check the nucleotide composition bias</description>
    <expand macro="bio_tools"/>
    <macros>
        <import>rseqc_macros.xml</import>
    </macros>

    <expand macro="stdio" />

    <version_command><![CDATA[read_NVC.py --version]]></version_command>

    <command><![CDATA[
        @BAM_SAM_INPUTS@
        read_NVC.py
            --input-file 'input.${extension}'
            --out-prefix output
            ${nx}
            --mapq ${mapq}
    ]]>
    </command>