comparison read_distribution.xml @ 60:1421603cc95b draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 1dfe55ca83685cadb0ce8f6ebbd8c13232376d1d

59:dbedfc5f5a3c

<tool id="rseqc_read_distribution" name="Read Distribution" version="@TOOL_VERSION@.1">
    <description>calculates how mapped reads were distributed over genome feature</description>
    <expand macro="bio_tools"/>
    <macros>
        <import>rseqc_macros.xml</import>
    </macros>

    <expand macro="stdio" />

    <version_command><![CDATA[read_distribution.py --version]]></version_command>

    <command><![CDATA[
        read_distribution.py -i '${input}' -r '${refgene}' > '${output}'
        ]]>
    </command>

    <inputs>
        <expand macro="bam_sam_param" />

60:1421603cc95b

<tool id="rseqc_read_distribution" name="Read Distribution" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@">
    <description>calculates how mapped reads were distributed over genome feature</description>
    <expand macro="bio_tools"/>
    <macros>
        <import>rseqc_macros.xml</import>
    </macros>

    <expand macro="stdio" />

    <version_command><![CDATA[read_distribution.py --version]]></version_command>

    <command><![CDATA[
        @BAM_SAM_INPUTS@
        read_distribution.py -i 'input.${extension}' -r '${refgene}' > '${output}'
        ]]>
    </command>

    <inputs>
        <expand macro="bam_sam_param" />