comparison tin.xml @ 62:473382134e56 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit ccb6f7edba5492f4750ef8a59c4f91eb67fdbbec

61:5968573462fa

            intronic reads (--subtract-background)." />
    </inputs>

    <outputs>
        <data name="outputsummary" format="tabular" from_work_dir="summary.tab" label="TIN on ${on_string} (summary)" />
        <data name="outputxls" format="xls" from_work_dir="tin.xls" label="TIN on ${on_string} (tin)" />
    </outputs>

    <!-- PDF Files contain R version, must avoid checking for diff -->
    <tests>
        <test expect_num_outputs="2">
            <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/>
            <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/>
            <output name="outputsummary" file="summary.tin.txt" ftype="tabular"/>
            <output name="outputxls" file="output.tin.xls" ftype="xls"/>
        </test>
    </tests>

    <help><![CDATA[
## tin.py

62:473382134e56

            intronic reads (--subtract-background)." />
    </inputs>

    <outputs>
        <data name="outputsummary" format="tabular" from_work_dir="summary.tab" label="TIN on ${on_string} (summary)" />
        <data name="outputxls" format="tabular" from_work_dir="tin.xls" label="TIN on ${on_string} (tin)" />
    </outputs>

    <!-- PDF Files contain R version, must avoid checking for diff -->
    <tests>
        <test expect_num_outputs="2">
            <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/>
            <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/>
            <output name="outputsummary" file="summary.tin.txt" ftype="tabular"/>
            <output name="outputxls" file="output.tin.xls" ftype="tabular"/>
        </test>
    </tests>

    <help><![CDATA[
## tin.py