Mercurial > repos > nilesh > rseqc
comparison bam_stat.xml @ 61:5968573462fa draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 8a91236cee4d408ae2b53a3e9b6daebc332d631a
| author | iuc |
|---|---|
| date | Sat, 10 Dec 2022 11:23:05 +0000 |
| parents | 1421603cc95b |
| children | 27e16a30667a |
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| 60:1421603cc95b | 61:5968573462fa |
|---|---|
| 1 <tool id="rseqc_bam_stat" name="BAM/SAM Mapping Stats" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@"> | 1 <tool id="rseqc_bam_stat" name="BAM/SAM Mapping Stats" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@"> |
| 2 <description> | 2 <description> |
| 3 reads mapping statistics for a provided BAM or SAM file. | 3 reads mapping statistics for a provided BAM or SAM file. |
| 4 </description> | 4 </description> |
| 5 <expand macro="bio_tools"/> | |
| 6 <macros> | 5 <macros> |
| 7 <import>rseqc_macros.xml</import> | 6 <import>rseqc_macros.xml</import> |
| 8 </macros> | 7 </macros> |
| 8 | |
| 9 <expand macro="bio_tools"/> | |
| 9 | 10 |
| 10 <expand macro="requirements" /> | 11 <expand macro="requirements" /> |
| 11 | 12 |
| 12 <expand macro="stdio" /> | 13 <expand macro="stdio" /> |
| 13 | 14 |
| 23 <expand macro="bam_sam_param" /> | 24 <expand macro="bam_sam_param" /> |
| 24 <expand macro="mapq_param" /> | 25 <expand macro="mapq_param" /> |
| 25 </inputs> | 26 </inputs> |
| 26 | 27 |
| 27 <outputs> | 28 <outputs> |
| 28 <data format="txt" name="output" /> | 29 <data format="txt" name="output" label="${tool.name} on ${on_string}: stats"/> |
| 29 </outputs> | 30 </outputs> |
| 30 | 31 |
| 31 <tests> | 32 <tests> |
| 32 <test> | 33 <test> |
| 33 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" /> | 34 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" /> |