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comparison clipping_profile.xml @ 61:5968573462fa draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 8a91236cee4d408ae2b53a3e9b6daebc332d631a
author iuc
date Sat, 10 Dec 2022 11:23:05 +0000
parents 1421603cc95b
children 473382134e56
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60:1421603cc95b 61:5968573462fa
1 <tool id="rseqc_clipping_profile" name="Clipping Profile" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@"> 1 <tool id="rseqc_clipping_profile" name="Clipping Profile" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@">
2 <description> 2 <description>
3 estimates clipping profile of RNA-seq reads from BAM or SAM file 3 estimates clipping profile of RNA-seq reads from BAM or SAM file
4 </description> 4 </description>
5 <expand macro="bio_tools"/>
6 <macros> 5 <macros>
7 <import>rseqc_macros.xml</import> 6 <import>rseqc_macros.xml</import>
8 </macros> 7 </macros>
8
9 <expand macro="bio_tools"/>
9 10
10 <expand macro="requirements" /> 11 <expand macro="requirements" />
11 12
12 <expand macro="stdio" /> 13 <expand macro="stdio" />
13 14
25 <expand macro="layout_param" /> 26 <expand macro="layout_param" />
26 <expand macro="rscript_output_param" /> 27 <expand macro="rscript_output_param" />
27 </inputs> 28 </inputs>
28 29
29 <outputs> 30 <outputs>
30 <expand macro="pdf_output_data" filename="output.clipping_profile.pdf" /> 31 <expand macro="pdf_output_data" filename="output.clipping_profile.pdf" label="${tool.name} on ${on_string}: PDF"/>
31 <expand macro="xls_output_data" filename="output.clipping_profile.xls" /> 32 <expand macro="xls_output_data" filename="output.clipping_profile.xls" label="${tool.name} on ${on_string}: XML"/>
32 <expand macro="rscript_output_data" filename="output.clipping_profile.r" /> 33 <expand macro="rscript_output_data" filename="output.clipping_profile.r" label="${tool.name} on ${on_string}: Rscript"/>
33 </outputs> 34 </outputs>
34 35
35 <tests> 36 <tests>
36 <test> 37 <test>
37 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" /> 38 <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" />