comparison read_duplication.xml @ 59:dbedfc5f5a3c draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"

58:1a052c827e88

<tool id="rseqc_read_duplication" name="Read Duplication" version="@WRAPPER_VERSION@">
    <description>determines reads duplication rate with sequence-based and mapping-based strategies</description>

    <macros>
        <import>rseqc_macros.xml</import>
    </macros>

    <expand macro="requirements" />

        <test>
            <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" />
            <param name="rscript_output" value="true" />
            <output name="outputxls" file="output.pos.DupRate.xls" />
            <output name="outputseqxls" file="output.seq.DupRate.xls" />
            <output name="outputr" file="output.DupRate_plot.r" />
            <output name="outputpdf" file="output.DupRate_plot.pdf" compare="sim_size" />
        </test>
    </tests>

    <help><![CDATA[

59:dbedfc5f5a3c

<tool id="rseqc_read_duplication" name="Read Duplication" version="@TOOL_VERSION@">
    <description>determines reads duplication rate with sequence-based and mapping-based strategies</description>
    <expand macro="bio_tools"/>
    <macros>
        <import>rseqc_macros.xml</import>
    </macros>

    <expand macro="requirements" />

        <test>
            <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" />
            <param name="rscript_output" value="true" />
            <output name="outputxls" file="output.pos.DupRate.xls" />
            <output name="outputseqxls" file="output.seq.DupRate.xls" />
            <output name="outputr" file="output.DupRate_plot_r" />
            <output name="outputpdf" file="output.DupRate_plot.pdf" compare="sim_size" />
        </test>
    </tests>

    <help><![CDATA[