comparison tin.xml @ 59:dbedfc5f5a3c draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"

58:1a052c827e88

<tool id="rseqc_tin" name="Transcript Integrity Number" version="@WRAPPER_VERSION@.1">
    <description>
        evaluates RNA integrity at a transcript level
    </description>

    <macros>
        <import>rseqc_macros.xml</import>
    </macros>

    <expand macro="requirements" />

    <!-- PDF Files contain R version, must avoid checking for diff -->
    <tests>
        <test>
            <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/>
            <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed"/>
            <output name="outputsummary">
                <assert_contents>
                    <has_line_matching expression="^Bam_file\tTIN\(mean\)\tTIN\(median\)\tTIN\(stdev\)$" />
                    <has_line_matching expression="^input\.bam\t8\.8709677419\d+\t8\.8709677419\d+\t0\.0$" />
                </assert_contents>

59:dbedfc5f5a3c

<tool id="rseqc_tin" name="Transcript Integrity Number" version="@TOOL_VERSION@.1">
    <description>
        evaluates RNA integrity at a transcript level
    </description>
    <expand macro="bio_tools"/>
    <macros>
        <import>rseqc_macros.xml</import>
    </macros>

    <expand macro="requirements" />

    <!-- PDF Files contain R version, must avoid checking for diff -->
    <tests>
        <test>
            <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/>
            <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/>
            <output name="outputsummary">
                <assert_contents>
                    <has_line_matching expression="^Bam_file\tTIN\(mean\)\tTIN\(median\)\tTIN\(stdev\)$" />
                    <has_line_matching expression="^input\.bam\t8\.8709677419\d+\t8\.8709677419\d+\t0\.0$" />
                </assert_contents>