Mercurial > repos > nilesh > rseqc

diff bam_stat.xml @ 60:1421603cc95b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 1dfe55ca83685cadb0ce8f6ebbd8c13232376d1d
author iuc
date Sat, 26 Nov 2022 15:19:14 +0000
parents dbedfc5f5a3c
children 5968573462fa
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--- a/bam_stat.xml	Sat Dec 18 19:41:19 2021 +0000
+++ b/bam_stat.xml	Sat Nov 26 15:19:14 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="rseqc_bam_stat" name="BAM/SAM Mapping Stats" version="@TOOL_VERSION@">
+<tool id="rseqc_bam_stat" name="BAM/SAM Mapping Stats" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@GALAXY_VERSION@">
     <description>
         reads mapping statistics for a provided BAM or SAM file.
     </description>
@@ -14,12 +14,13 @@
     <version_command><![CDATA[bam_stat.py --version]]></version_command>
 
     <command><![CDATA[
-        bam_stat.py -i '${input}' -q ${mapq} > '${output}'
+        @BAM_SAM_INPUTS@
+        bam_stat.py -i 'input.${extension}' -q ${mapq} > '${output}'
         ]]>
     </command>
 
     <inputs>
-        <expand macro="bam_param" />
+        <expand macro="bam_sam_param" />
         <expand macro="mapq_param" />
     </inputs>