diff read_duplication.xml @ 62:473382134e56 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit ccb6f7edba5492f4750ef8a59c4f91eb67fdbbec

--- a/read_duplication.xml	Sat Dec 10 11:23:05 2022 +0000
+++ b/read_duplication.xml	Wed Feb 22 15:06:01 2023 +0000
@@ -26,8 +26,8 @@
 
     <outputs>
         <expand macro="pdf_output_data" filename="output.DupRate_plot.pdf"  label="${tool.name} on ${on_string}: plot (PDF)"/>
-        <data format="xls" name="outputxls" from_work_dir="output.pos.DupRate.xls" label="${tool.name} on ${on_string}: positon (XLS)"/>
-        <data format="xls" name="outputseqxls" from_work_dir="output.seq.DupRate.xls" label="${tool.name} on ${on_string}: sequences (XLS)"/>
+        <data format="tabular" name="outputxls" from_work_dir="output.pos.DupRate.xls" label="${tool.name} on ${on_string}: positon"/>
+        <data format="tabular" name="outputseqxls" from_work_dir="output.seq.DupRate.xls" label="${tool.name} on ${on_string}: sequences"/>
         <expand macro="rscript_output_data" filename="output.DupRate_plot.r" label="${tool.name} on ${on_string}: Rscript"/>
     </outputs>
 
@@ -35,8 +35,8 @@
         <test>
             <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" />
             <param name="rscript_output" value="true" />
-            <output name="outputxls" file="output.pos.DupRate.xls" />
-            <output name="outputseqxls" file="output.seq.DupRate.xls" />
+            <output name="outputxls" file="output.pos.DupRate.xls" ftype="tabular"/>
+            <output name="outputseqxls" file="output.seq.DupRate.xls" ftype="tabular"/>
             <output name="outputr" file="output.DupRate_plot_r" />
             <output name="outputpdf" file="output.DupRate_plot.pdf" compare="sim_size" />
         </test>