Mercurial > repos > nilesh > rseqc

diff RNA_fragment_size.xml @ 59:dbedfc5f5a3c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
author iuc
date Sat, 18 Dec 2021 19:41:19 +0000
parents 5873cd7afb67
children 1421603cc95b
line wrap: on
line diff
--- a/RNA_fragment_size.xml	Thu Nov 28 15:56:37 2019 -0500
+++ b/RNA_fragment_size.xml	Sat Dec 18 19:41:19 2021 +0000
@@ -1,8 +1,8 @@
-<tool id="rseqc_RNA_fragment_size" name="RNA fragment size" version="@WRAPPER_VERSION@.1">
+<tool id="rseqc_RNA_fragment_size" name="RNA fragment size" version="@TOOL_VERSION@.1">
     <description>
      calculates the fragment size for each gene/transcript
     </description>
-
+    <expand macro="bio_tools"/>
     <macros>
         <import>rseqc_macros.xml</import>
     </macros>
@@ -34,7 +34,7 @@
     <tests>
         <test>
             <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" />
-            <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" />
+            <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/>
             <output name="output">
                 <assert_contents>
                     <has_line_matching expression="^chrom\ttx_start\ttx_end\tsymbol\tfrag_count\tfrag_mean\tfrag_median\tfrag_std$" />