Mercurial > repos > nilesh > rseqc
diff geneBody_coverage2.xml @ 59:dbedfc5f5a3c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
author | iuc |
---|---|
date | Sat, 18 Dec 2021 19:41:19 +0000 |
parents | daae0a118c36 |
children | 1421603cc95b |
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--- a/geneBody_coverage2.xml Thu Nov 28 15:56:37 2019 -0500 +++ b/geneBody_coverage2.xml Sat Dec 18 19:41:19 2021 +0000 @@ -1,8 +1,8 @@ -<tool id="rseqc_geneBody_coverage2" name="Gene Body Coverage (Bigwig)" version="@WRAPPER_VERSION@.1"> +<tool id="rseqc_geneBody_coverage2" name="Gene Body Coverage (Bigwig)" version="@TOOL_VERSION@.2"> <description> Read coverage over gene body </description> - + <expand macro="bio_tools"/> <macros> <import>rseqc_macros.xml</import> </macros> @@ -21,6 +21,7 @@ <inputs> <param name="input" type="data" label="Input bigwig file" format="bigwig" /> <expand macro="refgene_param" /> + <expand macro="rscript_output_param" /> </inputs> <outputs> @@ -30,12 +31,12 @@ </outputs> <tests> - <test> + <test expect_num_outputs="3"> <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bigwig" /> - <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" /> + <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/> <param name="rscript_output" value="true" /> <output name="outputpdf" file="output.geneBodyCoverage2.curves.pdf" compare="sim_size" /> - <output name="outputr" file="output.geneBodyCoverage2.r" /> + <output name="outputr" file="output.geneBodyCoverage2_r" /> <output name="outputtxt" file="output.geneBodyCoverage2.txt" /> </test> </tests>