Mercurial > repos > nilesh > rseqc
diff junction_annotation.xml @ 59:dbedfc5f5a3c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
author | iuc |
---|---|
date | Sat, 18 Dec 2021 19:41:19 +0000 |
parents | 5873cd7afb67 |
children | 1421603cc95b |
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--- a/junction_annotation.xml Thu Nov 28 15:56:37 2019 -0500 +++ b/junction_annotation.xml Sat Dec 18 19:41:19 2021 +0000 @@ -1,6 +1,6 @@ -<tool id="rseqc_junction_annotation" name="Junction Annotation" version="@WRAPPER_VERSION@.1"> +<tool id="rseqc_junction_annotation" name="Junction Annotation" version="@TOOL_VERSION@.1"> <description>compares detected splice junctions to reference gene model</description> - + <expand macro="bio_tools"/> <macros> <import>rseqc_macros.xml</import> </macros> @@ -45,10 +45,10 @@ <tests> <test> <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" /> - <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" /> + <param name="refgene" value="hg19_RefSeq_chr1_1-100000.bed" ftype="bed12"/> <param name="rscript_output" value="true" /> <output name="outputxls" file="output.junction.xls" /> - <output name="outputr" file="output.junction_plot.r" /> + <output name="outputr" file="output.junction_plot_r" /> <output name="outputpdf" file="output.splice_events.pdf" compare="sim_size" /> <output name="outputjpdf" file="output.splice_junction.pdf" compare="sim_size" /> </test>