Mercurial > repos > nilesh > rseqc
diff test-data/output.NVC_plot_r @ 59:dbedfc5f5a3c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 247059e2527b66f1dbecf1e61496daef921040c3"
author | iuc |
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date | Sat, 18 Dec 2021 19:41:19 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output.NVC_plot_r Sat Dec 18 19:41:19 2021 +0000 @@ -0,0 +1,17 @@ +position=c(0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50) +A_count=c(5,6,5,11,5,4,11,9,12,8,9,9,14,10,9,10,8,9,7,12,10,9,14,13,12,9,11,11,13,9,8,7,7,11,6,8,9,11,8,8,12,9,10,7,10,10,7,9,10,8,7) +C_count=c(7,7,9,9,9,11,7,8,9,9,8,6,8,6,9,10,4,9,5,8,6,9,6,11,8,13,16,8,6,9,6,9,8,11,12,17,8,9,9,12,9,13,12,13,12,10,10,9,6,10,8) +G_count=c(18,15,18,14,12,19,12,12,11,8,9,11,12,9,7,9,6,10,11,4,9,15,11,11,7,4,7,13,9,12,15,11,14,10,13,11,7,12,10,11,10,11,9,11,6,9,10,12,14,13,9) +T_count=c(10,8,5,4,14,6,10,9,8,10,14,14,6,15,15,9,14,9,12,10,15,7,9,5,10,8,6,8,12,10,11,13,11,8,9,4,16,8,13,9,9,7,9,9,12,11,13,10,10,9,16) +N_count=c(0,4,3,2,0,0,0,2,0,5,0,0,0,0,0,2,8,3,5,6,0,0,0,0,3,6,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0) +X_count=c(0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0) +total= A_count + C_count + G_count + T_count +ym=max(A_count/total,C_count/total,G_count/total,T_count/total) + 0.05 +yn=min(A_count/total,C_count/total,G_count/total,T_count/total) +pdf("output.NVC_plot.pdf") +plot(position,A_count/total,type="o",pch=20,ylim=c(yn,ym),col="dark green",xlab="Position of Read",ylab="Nucleotide Frequency") +lines(position,T_count/total,type="o",pch=20,col="red") +lines(position,G_count/total,type="o",pch=20,col="blue") +lines(position,C_count/total,type="o",pch=20,col="cyan") +legend(41,ym,legend=c("A","T","G","C"),col=c("dark green","red","blue","cyan"),lwd=2,pch=20,text.col=c("dark green","red","blue","cyan")) +dev.off()