diff bam_stat.xml @ 63:27e16a30667a draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit d7544582d5599c67a284faf9232cd2ccc4daa1de

--- a/bam_stat.xml	Wed Feb 22 15:06:01 2023 +0000
+++ b/bam_stat.xml	Tue Apr 09 11:24:55 2024 +0000
@@ -5,37 +5,28 @@
     <macros>
         <import>rseqc_macros.xml</import>
     </macros>
-
     <expand macro="bio_tools"/>
-
-    <expand macro="requirements" />
-
-    <expand macro="stdio" />
-
+    <expand macro="requirements"/>
+    <expand macro="stdio"/>
     <version_command><![CDATA[bam_stat.py --version]]></version_command>
-
     <command><![CDATA[
         @BAM_SAM_INPUTS@
         bam_stat.py -i 'input.${extension}' -q ${mapq} > '${output}'
         ]]>
     </command>
-
     <inputs>
-        <expand macro="bam_sam_param" />
-        <expand macro="mapq_param" />
+        <expand macro="bam_sam_param"/>
+        <expand macro="mapq_param"/>
     </inputs>
-
     <outputs>
         <data format="txt" name="output" label="${tool.name} on ${on_string}: stats"/>
     </outputs>
-
     <tests>
         <test>
-            <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam" />
-            <output name="output" file="output.bamstats.txt" />
+            <param name="input" value="pairend_strandspecific_51mer_hg19_chr1_1-100000.bam"/>
+            <output name="output" file="output.bamstats.txt"/>
         </test>
     </tests>
-
     <help><![CDATA[
 bam_stat.py
 +++++++++++
@@ -68,6 +59,5 @@
 
 ]]>
     </help>
-
-    <expand macro="citations" />
+    <expand macro="citations"/>
 </tool>