Mercurial > repos > nilesh > rseqc

view test-data/output.clipping_profile.r @ 54:5873cd7afb67 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rseqc commit 62a9135bf04aec398d3172d17ccd60f5242d8e82
author iuc
date Wed, 13 Jun 2018 18:02:25 -0400
parents 09846d5169fa
children
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pdf("output.clipping_profile.pdf")
read_pos=c(0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50)
clip_count=c(16.0,12.0,11.0,8.0,7.0,6.0,1.0,1.0,1.0,1.0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0,1.0,1.0,2.0,3.0,4.0,4.0)
nonclip_count= 40 - clip_count
plot(read_pos, nonclip_count*100/(clip_count+nonclip_count),col="blue",main="clipping profile",xlab="Position of read",ylab="Non-clipped %",type="b")
dev.off()