# HG changeset patch
# User Lance Parsons <lparsons@princeton.edu>
# Date 1406127150 14400
# Node ID e1dd4971828499d69f953f7c7c324dabfe6d3bae
# Parent  1e66f05a23aa65bdb1a1821ed0913cd68d800496
Fixed tool versions

diff -r 1e66f05a23aa -r e1dd49718284 geneBody_coverage.xml
--- a/geneBody_coverage.xml	Wed Jul 23 10:44:50 2014 -0400
+++ b/geneBody_coverage.xml	Wed Jul 23 10:52:30 2014 -0400
@@ -1,4 +1,4 @@
-<tool id="rseqc_geneBody_coverage" name="Gene Body Converage (BAM)" version="1.1">
+<tool id="rseqc_geneBody_coverage" name="Gene Body Converage (BAM)" version="2.3.9">
     <description>
         Read coverage over gene body.
     </description>
diff -r 1e66f05a23aa -r e1dd49718284 infer_experiment.xml
--- a/infer_experiment.xml	Wed Jul 23 10:44:50 2014 -0400
+++ b/infer_experiment.xml	Wed Jul 23 10:52:30 2014 -0400
@@ -1,4 +1,4 @@
-<tool id="rseqc_infer_experiment" name="Infer Experiment" version="1.1">
+<tool id="rseqc_infer_experiment" name="Infer Experiment" version="2.3.9">
     <description>speculates how RNA-seq were configured</description>
     <requirements>
         <requirement type="package" version="1.7.1">numpy</requirement>
diff -r 1e66f05a23aa -r e1dd49718284 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Jul 23 10:44:50 2014 -0400
+++ b/tool_dependencies.xml	Wed Jul 23 10:52:30 2014 -0400
@@ -1,13 +1,13 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="R" version="3.0.1">
-        <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository name="package_r_3_0_1" owner="iuc" />
     </package>
     <package name="numpy" version="1.7.1">
-        <repository changeset_revision="ef12a3a11d5b" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository name="package_numpy_1_7" owner="iuc" />
     </package>
     <package name="rseqc" version="2.3.9">
-        <repository changeset_revision="367d6fedfe41" name="package_rseqc_2_3_9" owner="lparsons" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository name="package_rseqc_2_3_9" owner="lparsons" />
     </package>
 
 </tool_dependency>