view tool_dependencies.xml @ 0:21af95369da7

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<?xml version="1.0"?>
<tool_dependency>
    <package name="zlib" version="1.2.8">
        <install version="1.0">
            <actions>
            	<action type="download_by_url">http://zlib.net/zlib-1.2.8.tar.gz</action>
                <action type="shell_command">./configure</action>
                 <action type="shell_command">./configure --prefix=$INSTALL_DIR/zlib</action>
                <action type="shell_command">make</action>
                <action type="shell_command">make install prefix=$INSTALL_DIR/zlib</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        	Tabix version 0.2.6. Tabix was written by Heng Li. The BGZF library was originally implemented by Bob Handsaker and modified by Heng Li for remote file access and in-memory caching.
        </readme>
    </package>
    <package name="sickle" version="1.2.8">
        <install version="1.0">
            <actions>
                <action type="shell_command">git clone https://github.com/najoshi/sickle.git</action>
                <action type="shell_command">make</action>
                <action type="move_file">
                    <source>sickle</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            Tabix version 0.2.6. Tabix was written by Heng Li. The BGZF library was originally implemented by Bob Handsaker and modified by Heng Li for remote file access and in-memory caching.
        </readme>
    </package>
</tool_dependency>