annotate tool_dependencies.xml @ 0:6478acbb2c36 draft

Uploaded
author nilesh
date Wed, 10 Jul 2013 15:05:34 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
1 <?xml version="1.0"?>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
2 <tool_dependency>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
3 <package name="tabix" version="0.2.6">
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
4 <install version="1.0">
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
5 <actions>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
6 <action type="download_by_url">http://sourceforge.net/projects/samtools/files/tabix/tabix-0.2.6.tar.bz2</action>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
7 <action type="shell_command">make</action>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
8 <action type="move_file">
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
9 <source>tabix</source>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
10 <destination>$INSTALL_DIR/bin</destination>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
11 </action>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
12 <action type="move_file">
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
13 <source>bgzip</source>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
14 <destination>$INSTALL_DIR/bin</destination>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
15 </action>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
16 <action type="set_environment">
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
18 </action>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
19 </actions>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
20 </install>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
21 <readme>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
22 Tabix version 0.2.6. Tabix was written by Heng Li. The BGZF library was originally implemented by Bob Handsaker and modified by Heng Li for remote file access and in-memory caching.
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
23 </readme>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
24 </package>
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
25
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
26
6478acbb2c36 Uploaded
nilesh
parents:
diff changeset
27 </tool_dependency>