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view tool_dependencies.xml @ 6:ea024cba4b7b draft

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author nilesh
date Wed, 10 Jul 2013 17:20:39 -0400
parents 6478acbb2c36
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<?xml version="1.0"?>
<tool_dependency>
    <package name="tabix" version="0.2.6">
        <install version="1.0">
            <actions>
            	<action type="download_by_url">http://sourceforge.net/projects/samtools/files/tabix/tabix-0.2.6.tar.bz2</action>
                <action type="shell_command">make</action>
                <action type="move_file">
                    <source>tabix</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="move_file">
                    <source>bgzip</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        	Tabix version 0.2.6. Tabix was written by Heng Li. The BGZF library was originally implemented by Bob Handsaker and modified by Heng Li for remote file access and in-memory caching.
        </readme>
    </package>
    
    
</tool_dependency>