# HG changeset patch
# User nilesh
# Date 1373491239 14400
# Node ID ea024cba4b7b80f25219cf53da7a765ed6a0f191
# Parent  4be32b814be093f451a0293fabd39ae06b7203bc
Deleted selected files

diff -r 4be32b814be0 -r ea024cba4b7b bgzip.xml
--- a/bgzip.xml	Wed Jul 10 16:57:46 2013 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,49 +0,0 @@
-<tool id="bgzip" name="bgzip" version="0.0.1">
-    <description>Block compression/decompression utility. Required for use of tabix.</description>
-    <requirements>
-        <requirements type="package" version="0.2.6">tabix</requirements>
-    </requirements>
-    <command>
-        bgzip 
-
-        #if str($virtualOffset) != ""
-            -b $virtualOffset
-        #end if
-
-        #if str($size) != ""
-            -s $size
-        #end if
-
-        $input
-    </command>
-    <inputs>
-        <param name="input" type="data" label="Input file" />
-        <param name="virtualOffset" type="text" optional="yes" label="Virtual Offset" />
-        <param name="size" type="text" optional="yes" label="Size" />
-    </inputs>
-
-    <outputs>
-        <data format= "bgz" name="output" from_work_dir="${input.file_name}.bgz"/>
-    </outputs>
-
-    <help>
-**What it does:** 
-
-The input data file is sorted and compressed by bgzip which has a gzip(1) like interface. Tabix requires the file to be compressed using this tool first.
-
-**Citation:**
-
-Tabix was written by Heng Li. The BGZF library was originally implemented by Bob Handsaker and modified by Heng Li for remote file access and in-memory caching.
-
-http://samtools.sourceforge.net/tabix.shtml
-
-**Example:**
-
-(grep ^"#" in.gff; grep -v ^"#" in.gff | sort -k1,1 -k4,4n) | bgzip > sorted.gff.gz;
-
-tabix -p gff sorted.gff.gz;
-
-tabix sorted.gff.gz chr1:10,000,000-20,000,000;
-
-    </help>
-</tool>