diff biohansel.xml @ 3:c1d05dd90ef2 draft

planemo upload for repository https://github.com/phac-nml/biohansel commit 38c1ecfc8847bbd25f66a78bfa99c753e2cbc4d2
author nml
date Fri, 16 Nov 2018 13:10:37 -0500
parents aaab9b598c9e
children 23fbe781ce41
line wrap: on
line diff
--- a/biohansel.xml	Wed Nov 07 10:19:04 2018 -0500
+++ b/biohansel.xml	Fri Nov 16 13:10:37 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="biohansel" name="biohansel" version="2.1.1">
+<tool id="biohansel" name="biohansel" version="2.1.2">
   <description>SNP subtyping of genome sequence reads or assemblies</description>
   <requirements>
     <requirement type="package" version="2.1.0">bio_hansel</requirement>
@@ -10,7 +10,7 @@
 
 ## Illumina FASTQ naming regular expression (https://github.com/phac-nml/biohansel/issues/38)
 #set global $ILLUMINA_REGEX = $re.compile(r'^([\w\-\_]+)_S\d+_L\d{3}_R(\d)_001\.fastq(\.gz)?$')
-#set global $FASTQ_DUMP_REGEX = $re.compile(r'^(\w+|\d+):((forward|reverse)(_\d+)?)\.fastq(\.gz|sanger)?$')
+#set global $FASTQ_DUMP_REGEX = $re.compile(r'^(\w+|\d+):((forward|reverse)(_\d+)?)\.fastq(\.gz|sanger|sanger\.gz)?$')
 
 #def is_gzipped_fastq($data_input)
   ## Is FASTQ data param gzipped type? i.e. either 'fastq.gz' or 'fastqsanger.gz'?