Mercurial > repos > nml > biohansel
changeset 3:c1d05dd90ef2 draft
planemo upload for repository https://github.com/phac-nml/biohansel commit 38c1ecfc8847bbd25f66a78bfa99c753e2cbc4d2
| author | nml |
|---|---|
| date | Fri, 16 Nov 2018 13:10:37 -0500 |
| parents | aaab9b598c9e |
| children | 23fbe781ce41 |
| files | biohansel.xml |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/biohansel.xml Wed Nov 07 10:19:04 2018 -0500 +++ b/biohansel.xml Fri Nov 16 13:10:37 2018 -0500 @@ -1,4 +1,4 @@ -<tool id="biohansel" name="biohansel" version="2.1.1"> +<tool id="biohansel" name="biohansel" version="2.1.2"> <description>SNP subtyping of genome sequence reads or assemblies</description> <requirements> <requirement type="package" version="2.1.0">bio_hansel</requirement> @@ -10,7 +10,7 @@ ## Illumina FASTQ naming regular expression (https://github.com/phac-nml/biohansel/issues/38) #set global $ILLUMINA_REGEX = $re.compile(r'^([\w\-\_]+)_S\d+_L\d{3}_R(\d)_001\.fastq(\.gz)?$') -#set global $FASTQ_DUMP_REGEX = $re.compile(r'^(\w+|\d+):((forward|reverse)(_\d+)?)\.fastq(\.gz|sanger)?$') +#set global $FASTQ_DUMP_REGEX = $re.compile(r'^(\w+|\d+):((forward|reverse)(_\d+)?)\.fastq(\.gz|sanger|sanger\.gz)?$') #def is_gzipped_fastq($data_input) ## Is FASTQ data param gzipped type? i.e. either 'fastq.gz' or 'fastqsanger.gz'?