diff bionumeric_convert.xml @ 1:07dfb8fd47f4 draft default tip

planemo upload commit e0d65bf0850ce95ffb89982e61f2136fcf0359ee

--- a/bionumeric_convert.xml	Mon Mar 18 13:15:57 2019 -0400
+++ b/bionumeric_convert.xml	Mon May 13 12:59:15 2019 -0400
@@ -1,38 +1,41 @@
-<tool id="bionumeric_convert" name="biohansel2bionumerics" version="0.1.0">
+<tool id="bionumeric_convert" name="biohansel2bionumerics" version="0.2.0">
     <description>compliant results</description>
     <requirements>
         <requirement type="package" version="0.24.1">pandas</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        $__tool_directory__/bionumeric_converter.py -f '$Input' -o '$output'
+        $__tool_directory__/bionumeric_converter.py -f '$Input' -o '$Output'
     ]]></command>
     <inputs>
         <param type="data" name="Input" format="tabular"/>
     </inputs>
     <outputs>
-        <data name="output" format="csv" from_work_dir="output" label="Output.csv"/>
+        <data name="Output" format="csv" from_work_dir="output" label="Biohansel_Bionumerics"/>
     </outputs>
     <tests>
         <test>
             <param name="Input" value="results.tab"/>
-            <output name="output" value="Output.csv"/>
+            <output name="Output" value="Biohansel_Bionumerics.csv"/>
         </test>
     </tests>
     <help><![CDATA[
         **What it does**
 
-        This tool is a supplementary script that takes *only* BioHansel output data and converts it into a format compatible with bionumerics.
+        This tool is a supplementary script that takes Biohansel output data and converts it into a format compatible with Bionumerics.
 
-        **How to run it**
+        **Inputs:**
+
+        - *Individual* output or *Collection* of outputs for any of the three Biohansel results files (tech_results.tab, match_results.tab, or results.tab)
 
-        1. Input any of your BioHansel output files (tech_results.tab, match_results.tab, and results.tab)
-        2. Click Execute
+        **Outputs:**
 
-        **Specific modifications done on the data**
+        - A .CSV file or a collection of .CSV files called "*Output*" that can be renamed and downloaded as required.
+
+        **Specific modifications done to the data**
 
         1. Converts all commas in the output to "/"
-        2. Shortens BioHansel qc_messages if they are over 150 characters
-        3. Converts the .tab file to a .csv file
+        2. Splits Biohansel qc_message column into multiple columns if the message is longer than 150 characters
+        3. Converts the .tab or .tsv file to a .csv file
 
     ]]></help>
     <citations>