view bionumeric_convert.xml @ 0:b000a3130db8 draft

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author nml
date Mon, 18 Mar 2019 13:15:57 -0400
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<tool id="bionumeric_convert" name="biohansel2bionumerics" version="0.1.0">
    <description>compliant results</description>
        <requirement type="package" version="0.24.1">pandas</requirement>
    <command detect_errors="exit_code"><![CDATA[
        $__tool_directory__/ -f '$Input' -o '$output'
        <param type="data" name="Input" format="tabular"/>
        <data name="output" format="csv" from_work_dir="output" label="Output.csv"/>
            <param name="Input" value=""/>
            <output name="output" value="Output.csv"/>
        **What it does**

        This tool is a supplementary script that takes *only* BioHansel output data and converts it into a format compatible with bionumerics.

        **How to run it**

        1. Input any of your BioHansel output files (,, and
        2. Click Execute

        **Specific modifications done on the data**

        1. Converts all commas in the output to "/"
        2. Shortens BioHansel qc_messages if they are over 150 characters
        3. Converts the .tab file to a .csv file