Mercurial > repos > nml > combine_assemblystats
diff test-data/second.txt @ 0:1855203c2e6c draft default tip
planemo upload for repository https://github.com/phac-nml/galaxy_tools commit 132092ff7fe1c4810d1221054419389180b81657
| author | nml |
|---|---|
| date | Wed, 08 Nov 2017 16:38:50 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/second.txt Wed Nov 08 16:38:50 2017 -0500 @@ -0,0 +1,34 @@ +Statistics for contig lengths: + Min contig length: 1,134 + Max contig length: 101,601 + Mean contig length: 24967.61 + Standard deviation of contig length: 23081.09 + Median contig length: 16,588 + N50 contig length: 44,563 + +Statistics for numbers of contigs: + Number of contigs: 185 + Number of contigs >=1kb: 185 + Number of contigs in N50: 37 + +Statistics for bases in the contigs: + Number of bases in all contigs: 4,619,008 + Number of bases in contigs >=1kb: 4,619,008 + GC Content of contigs: 47.50 % + +Simple Dinucleotide repeats: + Number of contigs with over 70% dinucleotode repeats: 0.00 % (0 contigs) + AT: 0.00 % (0 contigs) + CG: 0.00 % (0 contigs) + AC: 0.00 % (0 contigs) + TG: 0.00 % (0 contigs) + AG: 0.00 % (0 contigs) + TC: 0.00 % (0 contigs) + +Simple mononucleotide repeats: + Number of contigs with over 50% mononucleotode repeats: 0.00 % (0 contigs) + AA: 0.00 % (0 contigs) + TT: 0.00 % (0 contigs) + CC: 0.00 % (0 contigs) + GG: 0.00 % (0 contigs) +