view concat_fastqs.xml @ 0:31c4f7540ddc draft default tip

"planemo upload for repository https://github.com/phac-nml/concat commit 5129b413d1ed81e9e719e11c1728f2814e35c14c"

<tool id="concat_fastqs" name="Concat R1 and R2 fastq" version="0.2">
  <description>Combine forward and reverse fastqs files </description>
  <command>
	cat '$texts.forward' '$texts.reverse' > '$output'
  </command>
  <inputs>
     <param name="texts" type="data_collection" label="Paired Collection of Fastq reads" help="" optional="false" collection_type="paired" />
  </inputs>
  <outputs>
    <data name="output"  format="fastqsanger" label="$texts.name"></data>
  
  </outputs>
  <tests>
	  <test>
	    <param name="texts">
        <collection type="paired">
          <element name="forward" value="forward.fastq" />
          <element name="reverse" value="reverse.fastq" />
        </collection>
      </param>
      <output name="output" file="output.fastq" />      

	  </test>

  </tests>
  <help>
<![CDATA[Concat is used to concatenate two files]]>
  </help>
</tool>