comparison fasta_to_bed.xml @ 0:1b3c339fd390 draft default tip

planemo upload for repository https://github.com/phac-nml/galaxy_tools commit a0204b99a722240fe9b03b78a0786b30aa8ecc96

0:1b3c339fd390

<tool id="fasta2bed" name="Fasta to Bed File" version="1.0.0">
  <description>Create Bed file from Multiple fasta file</description>
    <requirements>
      <requirement type="package" version="1.6.924">perl-bioperl</requirement>
      <requirement type="package" version="2.49">perl-getopt-long</requirement>
    </requirements>  
    <command detect_errors="exit_code"><![CDATA[      
        perl $__tool_directory__/fasta_to_bed.pl 
        -i '$dataset'
        -o '$output'
    ]]></command>        
    <inputs>
        <param name="dataset" type="data" format="fasta" label="fasta or multifasta file" help="fasta to convert to bed file."/> 
    </inputs>
    <outputs>
        <data name="output" format="bed"/>
    </outputs>
    <tests>
      <test>
            <param name="dataset" value="contigs.fasta"/>
            <output name="output" value="results.bed"/>
      </test>
    </tests>
    <help>
    Create a bed file format using the start and end position of one or more fata record in a fasta file.

    </help>
</tool>