Mercurial > repos > nml > filter_spades_repeats
comparison filter_spades_repeats.xml @ 1:0e3d2c8b1b23 draft default tip
planemo upload for repository https://github.com/phac-nml/galaxy_tools/ commit 3f9ae719338c7c8db81d645b8ee09727e2d9ce23
| author | nml |
|---|---|
| date | Tue, 07 Nov 2017 11:52:52 -0500 |
| parents | 90957420cc07 |
| children |
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| 0:90957420cc07 | 1:0e3d2c8b1b23 |
|---|---|
| 1 <tool id="filter_spades_repeat" name="Filter SPAdes repeats" version="1.0.0"> | 1 <tool id="filter_spades_repeat" name="Filter SPAdes repeats" version="1.0.1"> |
| 2 <description>Remove short and repeat contigs/scaffolds</description> | 2 <description>Remove short and repeat contigs/scaffolds</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.6.924">perl-bioperl</requirement> | 4 <requirement type="package" version="1.6.924">perl-bioperl</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command detect_errors="exit_code"><![CDATA[ | 6 <command detect_errors="exit_code"><![CDATA[ |
| 7 | 7 |
| 8 perl $__tool_directory__/filter_spades_repeats.pl | 8 perl '$__tool_directory__/filter_spades_repeats.pl' |
| 9 | 9 |
| 10 -i '$fasta_input' | 10 -i '$fasta_input' |
| 11 -t '$tab_input' | 11 -t '$tab_input' |
| 12 -c '$cov_cutoff' | 12 -c '$cov_cutoff' |
| 13 -r '$rep_cutoff' | 13 -r '$rep_cutoff' |