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planemo upload for repository https://github.com/phac-nml/galaxy_tools/ commit 8ea19b9db8a5d861466adf3bf4e01928d3d1ca38
author nml
date Thu, 12 Oct 2017 15:04:45 -0400
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Filter SPAdes repeats Results Summary
======================================

Paramaters used:
Length cutoff for calcularing average cutoff: 5000
Coverage cutoff ratio: 0.33
Repeat cutoff ratio: 1.75
Length cutoff: 1000

Calculations:
Average coverage: 39.0276794117647
Coverage cutoff: 12.8791342058824
Repeat cutoff: 68.2984389705882

File headers:
Filtered sequences (with repeats):
>SRR6126859_1 length_852517_cov_27.8446
>SRR6126859_2 length_405903_cov_39.4874
>SRR6126859_3 length_294698_cov_37.1403
>SRR6126859_4 length_269266_cov_28.5399
>SRR6126859_5 length_264367_cov_32.1759
>SRR6126859_6 length_229146_cov_33.6442
>SRR6126859_7 length_228458_cov_34.4838
>SRR6126859_8 length_221034_cov_34.7177
>SRR6126859_9 length_189827_cov_33.7581
>SRR6126859_10 length_183437_cov_32.1863
>SRR6126859_11 length_162443_cov_33.7668
>SRR6126859_12 length_153208_cov_40.7852
>SRR6126859_13 length_151655_cov_31.6292
>SRR6126859_14 length_135647_cov_38.4498
>SRR6126859_15 length_120775_cov_32.1216
>SRR6126859_16 length_106152_cov_35.3715
>SRR6126859_17 length_77075_cov_40.8552
>SRR6126859_18 length_64552_cov_32.9705
>SRR6126859_19 length_60038_cov_41.8947
>SRR6126859_20 length_57173_cov_21.4966
>SRR6126859_21 length_56928_cov_34.5009
>SRR6126859_22 length_55686_cov_38.1046
>SRR6126859_23 length_53048_cov_38.3551
>SRR6126859_24 length_49979_cov_31.737
>SRR6126859_25 length_49347_cov_32.9659
>SRR6126859_26 length_44649_cov_39.2504
>SRR6126859_27 length_36027_cov_38.5995
>SRR6126859_28 length_32857_cov_33.8707
>SRR6126859_29 length_26264_cov_32.2501
>SRR6126859_30 length_10716_cov_31.2279
>SRR6126859_32 length_6213_cov_64.7694
>SRR6126859_33 length_5280_cov_19.9357
>SRR6126859_34 length_5115_cov_198.272(5 copies)
>SRR6126859_35 length_4648_cov_102.186(2 copies)
>SRR6126859_36 length_4417_cov_33.2696
>SRR6126859_37 length_2182_cov_50.1815
>SRR6126859_38 length_1598_cov_94.5224(2 copies)
>SRR6126859_39 length_1043_cov_65.8816

Filtered sequences (no repeats):
>SRR6126859_1 length_852517_cov_27.8446
>SRR6126859_2 length_405903_cov_39.4874
>SRR6126859_3 length_294698_cov_37.1403
>SRR6126859_4 length_269266_cov_28.5399
>SRR6126859_5 length_264367_cov_32.1759
>SRR6126859_6 length_229146_cov_33.6442
>SRR6126859_7 length_228458_cov_34.4838
>SRR6126859_8 length_221034_cov_34.7177
>SRR6126859_9 length_189827_cov_33.7581
>SRR6126859_10 length_183437_cov_32.1863
>SRR6126859_11 length_162443_cov_33.7668
>SRR6126859_12 length_153208_cov_40.7852
>SRR6126859_13 length_151655_cov_31.6292
>SRR6126859_14 length_135647_cov_38.4498
>SRR6126859_15 length_120775_cov_32.1216
>SRR6126859_16 length_106152_cov_35.3715
>SRR6126859_17 length_77075_cov_40.8552
>SRR6126859_18 length_64552_cov_32.9705
>SRR6126859_19 length_60038_cov_41.8947
>SRR6126859_20 length_57173_cov_21.4966
>SRR6126859_21 length_56928_cov_34.5009
>SRR6126859_22 length_55686_cov_38.1046
>SRR6126859_23 length_53048_cov_38.3551
>SRR6126859_24 length_49979_cov_31.737
>SRR6126859_25 length_49347_cov_32.9659
>SRR6126859_26 length_44649_cov_39.2504
>SRR6126859_27 length_36027_cov_38.5995
>SRR6126859_28 length_32857_cov_33.8707
>SRR6126859_29 length_26264_cov_32.2501
>SRR6126859_30 length_10716_cov_31.2279
>SRR6126859_32 length_6213_cov_64.7694
>SRR6126859_33 length_5280_cov_19.9357
>SRR6126859_36 length_4417_cov_33.2696
>SRR6126859_37 length_2182_cov_50.1815
>SRR6126859_39 length_1043_cov_65.8816

Repeat sequences:
>SRR6126859_34 length_5115_cov_198.272(5 copies)
>SRR6126859_35 length_4648_cov_102.186(2 copies)
>SRR6126859_38 length_1598_cov_94.5224(2 copies)

Discarded sequences:
>SRR6126859_31 length_7815_cov_9.7826
>SRR6126859_40 length_966_cov_206.632
>SRR6126859_41 length_667_cov_1.27941
>SRR6126859_42 length_665_cov_1.22951
>SRR6126859_43 length_602_cov_1.38757
>SRR6126859_44 length_574_cov_2.62428
>SRR6126859_45 length_573_cov_1.12934
>SRR6126859_46 length_519_cov_1.5625
>SRR6126859_47 length_512_cov_1.28009
>SRR6126859_48 length_502_cov_1.30649
>SRR6126859_49 length_491_cov_1.52294
>SRR6126859_50 length_487_cov_1.23611
>SRR6126859_51 length_474_cov_1.86158
>SRR6126859_52 length_466_cov_0.944039
>SRR6126859_53 length_462_cov_0.958231
>SRR6126859_54 length_454_cov_75.198
>SRR6126859_55 length_453_cov_0.974874
>SRR6126859_56 length_450_cov_0.98481
>SRR6126859_57 length_444_cov_1.49357
>SRR6126859_58 length_443_cov_1
>SRR6126859_59 length_441_cov_0.914508
>SRR6126859_60 length_437_cov_1.01832
>SRR6126859_61 length_435_cov_1.02632
>SRR6126859_62 length_434_cov_1.02639
>SRR6126859_63 length_428_cov_1.0429
>SRR6126859_64 length_426_cov_40.0108
>SRR6126859_65 length_416_cov_1.07756
>SRR6126859_66 length_416_cov_1.07756
>SRR6126859_67 length_415_cov_1.08333
>SRR6126859_68 length_411_cov_1.64326
>SRR6126859_69 length_411_cov_1.09551
>SRR6126859_70 length_410_cov_1.09014
>SRR6126859_71 length_410_cov_1.04225
>SRR6126859_72 length_409_cov_0.977401
>SRR6126859_73 length_407_cov_1.03693
>SRR6126859_74 length_406_cov_1.11111
>SRR6126859_75 length_406_cov_1.10826
>SRR6126859_76 length_404_cov_1.0659
>SRR6126859_77 length_400_cov_1.12464
>SRR6126859_78 length_399_cov_0.918605
>SRR6126859_79 length_398_cov_1.13703
>SRR6126859_80 length_395_cov_0.979412
>SRR6126859_81 length_392_cov_1.09199
>SRR6126859_82 length_392_cov_1.04154
>SRR6126859_83 length_391_cov_1.16071
>SRR6126859_84 length_391_cov_1.14286
>SRR6126859_85 length_390_cov_1.0806
>SRR6126859_86 length_389_cov_1.16168
>SRR6126859_87 length_386_cov_1.17523
>SRR6126859_88 length_385_cov_1.18182
>SRR6126859_89 length_383_cov_1.1311
>SRR6126859_90 length_383_cov_1.01829
>SRR6126859_91 length_379_cov_1.20062
>SRR6126859_92 length_379_cov_1.2037
>SRR6126859_93 length_375_cov_1.2125
>SRR6126859_94 length_375_cov_0.95625
>SRR6126859_95 length_371_cov_1.23101
>SRR6126859_96 length_368_cov_1.17252
>SRR6126859_97 length_366_cov_1.2508
>SRR6126859_98 length_365_cov_1.25484
>SRR6126859_99 length_362_cov_1.26384
>SRR6126859_100 length_357_cov_1.25828
>SRR6126859_101 length_357_cov_1.28808
>SRR6126859_102 length_354_cov_1.30435
>SRR6126859_103 length_354_cov_39.5084
>SRR6126859_104 length_349_cov_1.31633
>SRR6126859_105 length_348_cov_1.33106
>SRR6126859_106 length_348_cov_1.06485
>SRR6126859_107 length_348_cov_0.849829
>SRR6126859_108 length_346_cov_1.20619
>SRR6126859_109 length_344_cov_1.34256
>SRR6126859_110 length_344_cov_1.29758
>SRR6126859_111 length_344_cov_1.31142
>SRR6126859_112 length_342_cov_1.35889
>SRR6126859_113 length_342_cov_1.19164
>SRR6126859_114 length_342_cov_0.923345
>SRR6126859_115 length_342_cov_31.9024
>SRR6126859_116 length_341_cov_1.36364
>SRR6126859_117 length_341_cov_1.36364
>SRR6126859_118 length_341_cov_1.36014
>SRR6126859_119 length_340_cov_1.32632
>SRR6126859_120 length_332_cov_1.27437
>SRR6126859_121 length_330_cov_1.41818
>SRR6126859_122 length_327_cov_1.43382
>SRR6126859_123 length_327_cov_1.34926
>SRR6126859_124 length_324_cov_1.44981
>SRR6126859_125 length_324_cov_1.44981
>SRR6126859_126 length_321_cov_1.46241
>SRR6126859_127 length_321_cov_55.8346
>SRR6126859_128 length_321_cov_1.46241
>SRR6126859_129 length_321_cov_1.46241
>SRR6126859_130 length_321_cov_1.21805
>SRR6126859_131 length_316_cov_1.49042
>SRR6126859_132 length_315_cov_1.49615
>SRR6126859_133 length_314_cov_1.37452
>SRR6126859_134 length_307_cov_1.54365
>SRR6126859_135 length_307_cov_2.25
>SRR6126859_136 length_306_cov_1.17131
>SRR6126859_137 length_273_cov_33.555
>SRR6126859_138 length_261_cov_25.1408
>SRR6126859_139 length_246_cov_73.3194
>SRR6126859_140 length_242_cov_34.2941
>SRR6126859_141 length_241_cov_84.7527
>SRR6126859_142 length_232_cov_26.5876
>SRR6126859_143 length_225_cov_41.1235
>SRR6126859_144 length_170_cov_188.53
>SRR6126859_145 length_123_cov_63.4853
>SRR6126859_146 length_117_cov_29.2742
>SRR6126859_147 length_112_cov_2.45614
>SRR6126859_148 length_100_cov_163.6
>SRR6126859_149 length_99_cov_124.886
>SRR6126859_150 length_88_cov_1.72727
>SRR6126859_151 length_87_cov_112.25
>SRR6126859_152 length_80_cov_191
>SRR6126859_153 length_79_cov_61.4583
>SRR6126859_154 length_79_cov_146.917
>SRR6126859_155 length_78_cov_233.957
>SRR6126859_156 length_77_cov_146.636
>SRR6126859_157 length_77_cov_101.818
>SRR6126859_158 length_71_cov_47.75
>SRR6126859_159 length_68_cov_268.077
>SRR6126859_160 length_66_cov_48.3636
>SRR6126859_161 length_66_cov_93.9091
>SRR6126859_162 length_66_cov_118.909
>SRR6126859_163 length_59_cov_247.5
>SRR6126859_164 length_56_cov_222
>SRR6126859_165 length_56_cov_35
>SRR6126859_166 length_56_cov_194
>SRR6126859_167 length_56_cov_801