Mercurial > repos > nml > filter_stats
comparison filter-stats.xml @ 1:2fbea749a1d1 draft default tip
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 57067916cb7b9c5b65c1da59d4bbb846c3e3af2f"
| author | nml |
|---|---|
| date | Tue, 23 Jun 2020 10:25:53 -0400 |
| parents | 89c3ba37711c |
| children |
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| 0:89c3ba37711c | 1:2fbea749a1d1 |
|---|---|
| 1 <tool id="filterstat" name="Filter Stats" version ="1.8.2"> | 1 <tool id="filterstat" name="Filter Stats" version ="@VERSION@+galaxy1"> |
| 2 <description>Identify number of positions excluded based on filtered status</description> | 2 <description>Identify number of positions excluded based on filtered status</description> |
| 3 <requirements> | 3 <macros> |
| 4 <requirement type="package" version="1.8.2">snvphyl-tools</requirement> | 4 <import>macros.xml</import> |
| 5 </requirements> | 5 </macros> |
| 6 <expand macro="requirements"/> | |
| 6 <command detect_errors="exit_code"> | 7 <command detect_errors="exit_code"> |
| 7 filter-stats.pl -i $tabfile | 8 filter-stats.pl -i $tabfile |
| 8 #if $summary: | 9 #if $summary: |
| 9 -a | 10 -a |
| 10 #end if | 11 #end if |
| 41 | 42 |
| 42 | 43 |
| 43 **Options** | 44 **Options** |
| 44 - -all When this option is set, the summary will include all the entries marked as 'filtered-invalid' | 45 - -all When this option is set, the summary will include all the entries marked as 'filtered-invalid' |
| 45 </help> | 46 </help> |
| 46 <citations> | 47 <expand macro="citations"/> |
| 47 </citations> | |
| 48 </tool> | 48 </tool> |